In the interest of limiting required memory, the pred assumes you are using the Prolog interface of bio_db (see bio_db_interface/2), this predicate abolishes the interrogated bio_db data predicates once it has counted its contents.
Opts
pack(mtx),
use true to save as csv to bio_db_stats.csv, version for depositing
a bio_db_repo installed versioned csv in bio_db_scirpts/ directory,
or give atom of file name to use
As of bio_db_version(3:6:0,_) the directory scripts/bio_db_stats/ holds the csv output of this script for each
new pack(bio_db_repo) version, produced with option csv(version).
As of version 0.3 you need pack(by_unix)- this avoids over-loading the memory.
?- bio_db_stats.
% cgnc_galg_cgnc_curs/2 has 25925 records.
% cgnc_galg_cgnc_edat/2 has 25925 records.
% cgnc_galg_cgnc_ensg/2 has 15253 records.
% cgnc_galg_cgnc_name/2 has 25925 records.
% cgnc_galg_cgnc_ncbi/2 has 25921 records.
% cgnc_galg_cgnc_symb/2 has 25925 records.
% cgnc_galg_cgnc_syno/2 has 3030 records.
% ense_galg_ensg_chrl/5 has 30108 records.
% ense_galg_ensg_symb/2 has 14249 records.
% ense_galg_enst_chrl/5 has 72689 records.
% ense_galg_enst_ensg/2 has 72689 records.
% ense_gg6a_ensg_chrl/5 has 30862 records.
% ense_gg6a_ensg_symb/2 has 6480 records.
% ense_gg6a_enst_chrl/5 has 74296 records.
% ense_gg6a_enst_ensg/2 has 74296 records.
% ense_homs_ensg_chrl/5 has 62710 records.
% ense_homs_ensg_hgnc/2 has 41287 records.
% ense_homs_ensg_symb/2 has 41287 records.
% ense_homs_enst_chrl/5 has 252702 records.
% ense_homs_enst_ensg/2 has 252702 records.
% ense_musm_ensg_chrl/5 has 57010 records.
% ense_musm_ensg_mgim/2 has 55398 records.
% ense_musm_ensg_symb/2 has 57010 records.
% ense_musm_enst_chrl/5 has 149347 records.
% ense_musm_enst_ensg/2 has 149347 records.
% ense_suss_ensg_chrl/5 has 35670 records.
% ense_suss_ensg_symb/2 has 17511 records.
% ense_suss_enst_chrl/5 has 60273 records.
% ense_suss_enst_ensg/2 has 60273 records.
% gont_galg_symb_gont/4 has 117139 records.
% gont_homs_edge_gisa/2 has 68650 records.
% gont_homs_edge_gnrg/2 has 2951 records.
% gont_homs_edge_gpof/2 has 7696 records.
% gont_homs_edge_gprg/2 has 2945 records.
% gont_homs_edge_greg/2 has 3396 records.
% gont_homs_gont_gonm/2 has 42950 records.
% gont_homs_gont_symb/3 has 336023 records.
% gont_homs_symb_gont/3 has 336023 records.
% gont_musm_gont_symb/4 has 437854 records.
% gont_musm_mgim_gont/4 has 437865 records.
% gont_suss_symb_gont/4 has 125832 records.
% hgnc_homs_ccds_hgnc/2 has 18926 records.
% hgnc_homs_ensg_hgnc/2 has 41001 records.
% hgnc_homs_hgnc_ccds/2 has 18926 records.
% hgnc_homs_hgnc_chrb/2 has 43699 records.
% hgnc_homs_hgnc_ensg/2 has 41001 records.
% hgnc_homs_hgnc_name/2 has 43700 records.
% hgnc_homs_hgnc_ncbi/2 has 43654 records.
% hgnc_homs_hgnc_symb/2 has 43700 records.
% hgnc_homs_ncbi_hgnc/2 has 43654 records.
% hgnc_homs_ncbi_symb/2 has 43654 records.
% hgnc_homs_prev_symb/2 has 15516 records.
% hgnc_homs_symb_hgnc/2 has 43700 records.
% hgnc_homs_symb_ncbi/2 has 43654 records.
% hgnc_homs_syno_symb/2 has 43719 records.
% mgim_musm_mgim_chrl/5 has 676449 records.
% mgim_musm_mgim_genb/2 has 277243 records.
% mgim_musm_mgim_ncbi/2 has 719140 records.
% mgim_musm_mgim_symb/2 has 676449 records.
% mgim_musm_mgim_unip/2 has 16988 records.
% mgim_musm_symb_wdra/2 has 59005 records.
% mgim_musm_syno_mgim/2 has 257027 records.
% ncbi_homs_dnuc_symb/2 has 869087 records.
% ncbi_homs_ensg_ncbi/2 has 36278 records.
% ncbi_homs_ensp_ncbi/2 has 46300 records.
% ncbi_homs_ncbi_ensg/2 has 36278 records.
% ncbi_homs_ncbi_ensp/2 has 46300 records.
% ncbi_homs_rnuc_symb/2 has 466669 records.
% ncbi_musm_syno_symb/2 has 70348 records.
% ncbi_suss_ensg_ncbi/2 has 17782 records.
% ncbi_suss_ensp_ncbi/2 has 23600 records.
% ncbi_suss_ncbi_ensg/2 has 17782 records.
% ncbi_suss_ncbi_ensp/2 has 23600 records.
% pros_homs_pros_prsn/2 has 1851 records.
% pros_homs_pros_sprt/7 has 54556 records.
% strg_galg_edge_ensp/3 has 7821418 records.
% strg_galg_edge_symb/3 has 3910709 records.
% strg_galg_ensp_symb/2 has 15508 records.
% strg_homs_edge_ensp/3 has 11938498 records.
% strg_homs_edge_symb/3 has 5066306 records.
% strg_musm_edge_ensp/3 has 14496358 records.
% strg_musm_edge_symb/3 has 6258522 records.
% strg_suss_edge_ensp/3 has 13781164 records.
% strg_suss_edge_symb/3 has 6890582 records.
% strg_suss_ensp_symb/2 has 21597 records.
% unip_galg_unip_ensp/2 has 45911 records.
% unip_galg_unip_gyno/2 has 1534 records.
% unip_galg_unip_ncbi/2 has 9055 records.
% unip_galg_unip_strp/2 has 3054 records.
% unip_galg_unip_symb/2 has 45484 records.
% unip_homs_ensp_unip/2 has 120717 records.
% unip_homs_hgnc_unip/2 has 81725 records.
% unip_homs_sprt_seqn/2 has 20422 records.
% unip_homs_trem_nucs/2 has 1038884 records.
% unip_homs_trem_seqn/2 has 187358 records.
% unip_homs_unip_hgnc/2 has 81725 records.
% unip_homs_unip_ncbi/2 has 33144 records.
% unip_musm_ensp_unip/2 has 67162 records.
% unip_musm_gyno_unip/2 has 28951 records.
% unip_musm_mgim_unip/2 has 80434 records.
% unip_musm_trem_nucs/2 has 129691 records.
% unip_musm_unip_ncbi/2 has 32442 records.
% unip_musm_unip_symb/2 has 83163 records.
% Total number of predicates: 103, and records: 80948178
% You should better halt this session as bio_db predicates were retracted.
true.
?- bio_db_stats( [abolish(false),csv('/tmp/bio_db_stats.csv')] ).
% bio_db version: 3:4:0, date: date(2021,5,10)
% bio_db_repo version: 21:12:3, date: date(2021,12,3)
%
% edge_gont_is_a/2 has 70755 records.
....
?- shell('head -2 /tmp/bio_db_stats.csv').
edge_gont_is_a,2,70755
edge_gont_negatively_regulates,2,3089
...