In the interest of limiting required memory, the pred assumes you are using the Prolog interface of bio_db (see bio_db_interface/2), this predicate abolishes the interrogated bio_db data predicates once it has counted its contents.
pack(mtx), use true to save as csv to bio_db_stats.csv, version for depositing a bio_db_repo installed versioned csv in bio_db_scirpts/ directory, or give atom of file name to use
bio_db_version(3:6:0,_) the directory scripts/bio_db_stats/ holds the csv output of this script for each
pack(bio_db_repo) version, produced with option csv(
?- bio_db_stats. % bio_db version: 3:4:0, date: date(2021,5,10) % bio_db_repo version: 21:12:3, date: date(2021,12,3) % % edge_gont_is_a/2 has 70755 records. % edge_gont_negatively_regulates/2 has 3089 records. % edge_gont_part_of/2 has 8126 records. % edge_gont_positively_regulates/2 has 3062 records. % edge_gont_regulates/2 has 3552 records. % edge_strg_hs/3 has 11938498 records. % edge_strg_hs_symb/3 has 5085802 records. % edge_strg_mouse/3 has 14496358 records. % edge_strg_mouse_symb/3 has 4099916 records. % map_ense_ensg_chrl/5 has 60664 records. % map_ense_ensg_hgnc/2 has 40047 records. % map_ense_ensg_symb/2 has 40047 records. % map_ense_enst_chrl/5 has 236816 records. % map_ense_enst_ensg/2 has 236816 records. % map_ense_mouse_ensg_chrl/5 has 55416 records. % map_ense_mouse_ensg_mgim/2 has 52377 records. % map_ense_mouse_ensg_symb/2 has 55416 records. % map_ense_mouse_enst_chrl/5 has 142338 records. % map_ense_mouse_enst_ensg/2 has 142338 records. % map_gont_gont_gonm/2 has 43791 records. % map_gont_gont_symb/3 has 328427 records. % map_gont_mouse_gont_symb/3 has 419947 records. % map_gont_mouse_mgim_gont/3 has 419963 records. % map_gont_symb_gont/3 has 328427 records. % map_hgnc_ccds_hgnc/2 has 18927 records. % map_hgnc_ensg_hgnc/2 has 39997 records. % map_hgnc_entz_hgnc/2 has 42861 records. % map_hgnc_entz_symb/2 has 42861 records. % map_hgnc_hgnc_ccds/2 has 18927 records. % map_hgnc_hgnc_chrb/2 has 42909 records. % map_hgnc_hgnc_ensg/2 has 39997 records. % map_hgnc_hgnc_entz/2 has 42861 records. % map_hgnc_hgnc_name/2 has 42910 records. % map_hgnc_hgnc_symb/2 has 42910 records. % map_hgnc_prev_symb/2 has 15257 records. % map_hgnc_symb_entz/2 has 42861 records. % map_hgnc_symb_hgnc/2 has 42910 records. % map_hgnc_syno_symb/2 has 42537 records. % map_mgim_mouse_mgim_chrl/5 has 305940 records. % map_mgim_mouse_mgim_entz/2 has 347266 records. % map_mgim_mouse_mgim_genb/2 has 277165 records. % map_mgim_mouse_mgim_symb/2 has 305940 records. % map_mgim_mouse_mgim_unip/2 has 16921 records. % map_mgim_mouse_symb_wdra/2 has 57106 records. % map_mgim_mouse_syno_mgim/2 has 252980 records. % map_ncbi_dnuc_symb/2 has 319353 records. % map_ncbi_ensg_entz/2 has 35158 records. % map_ncbi_ensp_entz/2 has 44697 records. % map_ncbi_entz_ensg/2 has 35158 records. % map_ncbi_entz_ensp/2 has 44697 records. % map_ncbi_mouse_syno_symb/2 has 77610 records. % map_ncbi_rnuc_symb/2 has 379411 records. % map_pros_pros_prsn/2 has 1828 records. % map_pros_pros_sprt/7 has 54369 records. % map_unip_ensp_unip/2 has 115206 records. % map_unip_hgnc_unip/2 has 78237 records. % map_unip_mouse_ensp_unip/2 has 67082 records. % map_unip_mouse_gyno_unip/2 has 26771 records. % map_unip_mouse_mgim_unip/2 has 80470 records. % map_unip_mouse_trem_nucs/2 has 129597 records. % map_unip_mouse_unip_entz/2 has 32793 records. % map_unip_mouse_unip_symb/2 has 83203 records. % map_unip_sprt_seqn/2 has 20375 records. % map_unip_trem_nucs/2 has 1023960 records. % map_unip_trem_seqn/2 has 183336 records. % map_unip_unip_entz/2 has 33249 records. % map_unip_unip_hgnc/2 has 78237 records. % Total number of predicates: 67, and records: 43338828 % You should better halt this session as bio_db predicates were retracted. true. ?- bio_db_stats( [abolish(false),csv('/tmp/bio_db_stats.csv')] ). % bio_db version: 3:4:0, date: date(2021,5,10) % bio_db_repo version: 21:12:3, date: date(2021,12,3) % % edge_gont_is_a/2 has 70755 records. .... ?- shell('head -2 /tmp/bio_db_stats.csv'). edge_gont_is_a,2,70755 edge_gont_negatively_regulates,2,3089 ...